Dataset for CDS BID-like of organism Urocitellus parryii
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| 10 20 30 40 50 60 70 80 ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| * ATGgCg--------gg-ctCagaggacgtg------------------------gg------------------------ cacaatatctgattcagagcactacgc--cagaagttcctggatgaggcccaattgaaggaactgaagaaggctctgtg t ta aa aca a c a ttaaa acc g a caat tctgaaaata t c t a g c 90 100 110 120 130 140 150 160 ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| -----------------g----------------ctCcgggAtgtCAccct----------------------------- gttaaccctcacattcacgctgataggcatgcgcta-taaa-gta--ttaagcgagtgattaggcacatgactcagggct gcaggcg gta gt-cagc cca cct t-- ---- a-- -g--c tgaat ca g ca ga a c agg t - g a- ca a 170 180 190 200 210 220 230 240 ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| -------------------------------------------------------------------------------- tggacatgtctggtgttttcatggaaatggtaaaagccagtgccactgtagatattgttcaaaagaagttggtttatcta tc a c a a c ay cagagagggcc ta c aag aaa g c a 250 260 270 280 290 300 310 320 ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| -------------------------------------------------------------------------------- tacatgtgcacatatgcacccctgaaaccagatctggctctacctggccatcaatacactgtgcaaagactgctcggacc g a aagg tttg aactgctt t gtccagaag a t at attc ttctgatg c aact ta c a a a a c a ca 330 340 350 360 370 380 390 400 ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| -----------------------------------------------------ca---t--------------------- ccaatccaatggtcattaagcgaggggctggcactacgaagtatgtgtagcca--gga-gcctggtgtgcaggaatatat t g c act g ttta ac c a gct a tgcca t aag c t ta aa ctctac ca c a c 410 420 430 440 450 460 470 480 ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| ------------------------g-gggttctagctgccta-------------------------------------- ccaacagcctattctcaatggtct-ca--a-aat---t-a-tctcacccaagctgccaagaacaagaagtttgtcccaga a tt acgag c cat gcaa-t -c---ctc-t- - c c c c gc a 490 500 510 520 530 540 550 560 ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| -------cgtcagg-ggg--g--g-------------------------------------------------------- agggacttc-gc--c---tt-cg-ttcttggctgtgccaagatgcataatcttcatggagactctgaggatgatttaagt --g-- aa gg aa cc ct ctc c c cttctg gg a gt g tt ca ag 570 580 590 600 610 620 630 640 ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| -----------------------------------------------------------------------tctgggctc tgatggtgccctggtaaatgaattatacagtttgctgcgtgaccaggatccaattgtggttgtgaactgcc-ga----c- at a t a c t t a ggcatt gccga tt aat gaaag aaaa tg a cg agtg--tttt- a a ac gc ag 650 660 670 680 690 700 710 720 ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| cagaggccatcctcac-------------------------------cCaga---------------------------- ----t-aa-a--cgtagcaatttggccctttctccatatcctgtgaaa-tcgaaggaggtgttgtcattaataagtcagc tccg-c-- -tg---t g --- gaa aaa c g tat a g t a g g a c- - t 730 740 750 760 770 780 790 800 ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| -------------------------------------------------------a-aa-t------------c-ag--- actctaaaagccaagttcaatagtccatcgcccaccatcttttaaatagaatgtc-a--c-ggatcagtgggg-c--gct ga a t ga t acc gt tc t aag g g at a agc a t 810 820 830 840 850 860 870 880 ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| -a---a-t---------------------agccctg--ccc---aagaGgagctatt----------------------- g-agt-t-gaactttctgctaccgataccct-t-ctcagtgcga-g-g--ta-c-acacagcttgacattcaatcaatct ac c ctt c t ta cc t--a-ta-a --- gtc- a-taacc- c ttgaga ca cgtg g g a - at - t g- - -g g a ca 890 900 910 920 930 940 950 960 ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| -----------------------------------------------------agact-ctttgtgtttttgtcaa---- gttggacagctttctcaagagcatgcagcccaggagtggtgatgggagccacc-a---c--c-caaa---c-g---taca ca a atgc ctttat g t gctga tgcg ctg a gacagg-gt tc-a----cgc-t-tgg g a a t g aa c ca ca t a 970 980 990 1000 1010 1020 1030 1040 ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| -------------------------------------------------------------------------------- tggatgttgcttaaagatgggataattcctgagaacttcagtgttttcagtttgattcaggaaatgagaacacagaggcc 1050 1060 1070 1080 1090 1100 1110 1120 ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| --------------------aaatgtcTtc---c--------------------gtgtctctaGagac-------aGctg ttcattagttcaaactcagg-tcaagt-c-ccaagtacaaactgatgtgcttgtcc-agc-at-gcg-ctttact--g-- g----- -aa t- ct c a c g a a-at---t-g --c acc gggt aaa - a g g a- ct g- a- a -g g tc 1130 1140 1150 1160 1170 1180 1190 1200 ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| ccggttcttcaga-a-cc--g----gc--tg-t-t----ccctctg----tg-gtgtggttcagatcttg---------- --tc-c----t--t-g--gc-gtca--tc--t-t-gctg-----c-cccc-caa-a-tcg-a-----c--catagtttgc t--a-acgg-tggtc caca ct c ccctgc a -cttt ga ta-a-t-a-gagga- t cttca t a g gaa t a ag g g c- - -a cc g a a 1210 1220 1230 1240 1250 1260 1270 1280 ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| ----------tagcag--------ccactac-----------------------------------------AaAc---- caggtcacttg-----ggagatgt-----c-aaaaagtttttttgctccaatactcggagccccactatatc-g-gtaca t aa aaa-tct t tt ac-a c t c g t c t tta cagaatg c aa - -g g cta c gg a 1290 1300 1310 1320 1330 1340 1350 1360 ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| --------------ttatatgcactg-gtagatgaggaGcttgaacagctggtccaaga-gcag---cttcgaggttcct gaaggtagaaggtgc--agatacgaaaa-gaccc-tcg-aagatgtcc-a--agatt--t-gtacattcgaa-tcgca-c a t at aca -ac-----t--- -gt--a-ga-- --a------t-cc-t---cg ta-t ---g-g--c-ttg gctcc -t cc-c -a -t -tc t a ac- c c c- - a - a- -g- a a c t a a 1370 1380 1390 1400 1410 1420 1430 1440 ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| --------------------------------------------------c----------------------------- gcactgagtgcaaaagaagatgtgtctgctgactttgcacaggctgccat-tttgccataggtggaattgccaggactta a a a t ca ttgc t g 1450 1460 1470 1480 1490 1500 1510 1520 ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| -------------------------------------------------------------------------------- cacagatcagtgtgtgcagattctaacagagttgctggggcttcgtcaagaacacataactacagtggtggtgcagacgt c c g gag ag t a tt a ga 1530 1540 1550 1560 1570 1580 1590 1600 ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| --------------------------tag--------cgcagtgt----------------------------------- tccgagacctggtttggttgtgccctc--tgtaccgaac-t-at-gacagggtcgtcgtacccaaaaagaaagcttaaaa -gc --t-t--g a tt gcc a c 1610 1620 1630 1640 1650 1660 1670 1680 ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| -------ttcaggctctgcc---c---gag-ag-a-------------------------gcac-tatt-tgg-cta-tt tttgtgcga----gc-c---tgg-tgt---g--a-catccaagatagtgagggaaagcaa----t----t---c---c-- --gctc--t-tagaac acaa aa ag a ct gt tca gc gcc aatgc cc c gaac a c a ca ata t a a a 1690 1700 1710 1720 1730 1740 1750 1760 ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| ggtgttcatg--g-aagaa----caatgctc-t-aca-a--ag-----------------gtgaagtc-ga--ca---c- ----------gg-a-----tccc--------c-t---t-tt--aggactttgtagagaat--------a--ga--ttt-c ta acatatct g tttgagggtgatgata cgaccggat ct acaaccac atg gccaaga ccaggcctt g c a c a gt g a ag c cta t a a g a 1770 1780 1790 1800 1810 1820 1830 1840 ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| -------aag-t----c--c---------------tgcactc-------------------------------------- tgctgtt---a-ggag-ta-tcacgcatcaaagtt-------gtgcgccttttcctctctcgccctgctgaatgccagga gcgccgcggccaaccc gc agta cg ggtca t ag tg t ggg ttattct aataa g t a 1850 1860 1870 1880 1890 1900 1910 1920 ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| -------------------------------------------------------------------------------- catgctgggacgtctgttatattactgcattgaggaagaaaaggatatggctgtacgggaccgaggtctcttctactatc agcctg aa gc a g gg t t aat ca a g a taa a ggaccaa 1930 1940 1950 1960 1970 1980 1990 2000 ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| -------------------------------------------------------------------------------- gcctcctcttgagttgggattgatgaagttaagcaaggagttgaacattcacgtatcctgtgcagatctggaaactaaat aa ct a cac ca ca gaaa g a a t t t t c c 2010 2020 2030 2040 2050 2060 2070 2080 ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| -------------------------------------------------------------------------------- ctgacccttctctcggacttttggaggatcaggcagaaagacctgtgaatagttgggcttctgacttcaacactctggtg c tga at g ca attg t tc gtga c cgt ctt agaa ac g tta tcac 2090 2100 2110 2120 2130 2140 2150 2160 ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| ----------------------------------------------------------------------actat-tcta ccagtgtactctaagcaccaaatgtgtaatgcctctatggcaaagcagcatgactcaagcccgctgggca-----c---- cata at a c tg at t tttt tcgctct gc g t g 2170 2180 2190 2200 2210 2220 2230 2240 ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| aat----a-----------------ttca-a-c--t-tcaca-agca--------------------------------- ---gtgt-ggggcagagcatggtgg----g-g-gt-c-----c----tcctttactgtatcaggacacctgatttctgaa tc c c tt tgga atcct atg tgagcta ctcatatagctggttc g ggca agtt t c ta ggagcctg ct gtt t gga cg a a aaa c c a a 2250 2260 2270 2280 2290 2300 2310 2320 ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| -------------------------------------------------------------------------------- gagaacaaggggagagtattcagccttcttcttcattgccaacatcctcttcaacccttttttcttattataattcatat aga gt aatctc cgg yt a t 2330 2340 2350 2360 2370 2380 2390 2400 ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| --------------------------------------------------------------------a-aagcccct-- gattctttggcattgaatcctctgatcaattcttctccatcactgagggcagcccttgccctagccgc-g--------ga gc aacat aagcaat ac tg cctttttaagcg a ac g a 2410 2420 2430 2440 2450 2460 2470 2480 ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| --------c-ct---------------t-----------------------------------------------g---c ttctgaaa-t--cagcccccgccccct-gttgaacggacacctgagtcttttattgtagtagaggaagcaatatg-tcc- aatccgtgacgaggt aa ct aaa gcc cc gagt gac a t a a a g tt a 2490 2500 2510 2520 2530 2540 2550 2560 ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| c--t-gc--gc-t--c-ctgag-tatt----------------------------------------------------- -aa-t--ca--t-ac-g-----a----ttgagaaaacttggcttagccttgaagttgctcaccagcaggtgctgccttgg tccggtgtcatggggat tgt ccagg ccc a ca a tc a ca ga ct t ct ccac c ac cc gt a g c a a ccc gtg a a 2570 2580 2590 2600 2610 2620 2630 2640 ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| -------------------------------------------------------------------cgatgagtagggc cagggagaagtctagcatcctgacaccctccagatggctctacaagtagtgaacattcagtccattg-a------c---- aa cct a tcttt t g t aaga tgt tgcag cca a t ag aaca-t agtc-tacg ttc tcca ct a a 2650 2660 2670 2680 2690 2700 2710 2720 ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| tgggtct----------------------------------------caaccatggaaaacc-a-cctct---------- --ttc--gaaagctcaatagaagactgcttggcccatcttggagaaa-g--tt----gcg--t-a-----tcaaaacaaa gt---ta g-gt--gtcg---ttcc tggtg aacgag t aggc acttcgg t gacga a a g a aa 2730 2740 2750 2760 2770 2780 2790 2800 ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| -------------------------------gtgct-cag---------------------------------------- cattgaagacttcaggaaaaagcttcacaag-----a---gatgatactggctgtctattcttaacagaattgctgttgg agata gg tt a a tttgagaa catga a at a t cacg t 2810 2820 2830 2840 2850 2860 2870 2880 ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| -------------------------------------------------------------------------------- agtctgagaccactcagaaatgcaaatctctgtgaaacaaagtgaggcttgcacttttgatgaggctatcattgctggtc tc tcccc ag agcc g aa a tc g c aaa aa a gc 2890 2900 2910 2920 2930 2940 2950 2960 ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| -------------------------------------------------------------------------------- gccttcagatgttgggtgaccgattcactggacagttttatgtttgtgttagaaacgtcattgcaaaaaccattcaggga a ga tactatgcaaaggta cc c ac ga t c ag t t c 2970 2980 2990 3000 3010 3020 3030 3040 ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| -------------------------------------------------------------------------------- caggtaggagctgtactccaagacacagtgcagttcctcagcaaggcctggtgtgctcaggattccagccttgtatctga c gaagtgaatg a a acct ct a c 3050 3060 3070 3080 3090 3100 3110 3120 ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| ---a---------------------------------------------------------------------------- gag-gcctttctggcagtgtcagtgaaactttttgaatatgtggcccatgtggctcctgaagtggtgagacagatggctg tgc ca aca at g 3130 3140 3150 3160 3170 3180 3190 3200 ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| --------------------------------------------t---t-ca----ca-gggggatg------------- tgcccatgacgagtatgatcaatgggaaccaagccttcgcagcg-tca-t--aggc--a-t------ggaaggactacat g t gtacacggcaccggtgcatgccgtcga-ttacatactttatagca g a a g t cag atg tta tt a t agga gtctg a a c c c g 3210 3220 3230 3240 3250 3260 3270 3280 ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| -ggaatatt-----------------------------------t--------------g-a------------------ t----ct-cttattgcagaagatagcaatgacatttatatcctgactagtgacaactcc-g-gatgtctggggtctggca gactt--a- c c cctttaaatattccc caa t actcgagcg - ta cggtg a agcgc a ac 3290 ....:....|.... ----aaaaatcTga tact-g--tgtgag gttcg-tggaa gaacccc-cg ttgtc |
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