Dataset for CDS BID-like of organism Suricata suricatta

[Download (right click)] [Download Frequencies (right click)] [Sequences] [Alignment]

        10        20        30        40        50        60        70        80
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
atggcaggctcgtaaga------------------------------gctgggcctccggga------------------
---ctgata--cg----gtggagttttccaaatttgttttgcaggca-------a-----ctcgccatgtgcaggcttca
   ------gg--ttcta ct    gga t    ccc g c   c   gctttt- ttc --g a  g a g        
   aaccagc tccga         ac  c                      cg  a    g     a            
         a                                                                      

        90       100       110       120       130       140       150       160
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
-----------------------------------------ggacac-gcttggagtcttagccg---ccttc-------
gggagcagcaccatggacccgccagtgcttgtgacttggag-a----cc--ga--cga-----a-gcc--aa-agcatag
                  t agtg    cgc    c a   c-gat  -  --  ---cggcg-c  g g-- gcggccc
                                           c g                a                 
                                                                                

       170       180       190       200       210       220       230       240
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
----tttaggcgag-tgaggctgcacc---ca----g----caag---a--cct-----cgggtcgccaatgctgccggg
aattc---------gg-----cat---aac--agcc-tatg----gcc-ca---gctgc------cgacggtgcaatccc
 g g-aa at ct  -c tttg ag ttca  ccattgcat    aag gcgga     gtccgg-a g a       at
     gc     c   a a          t   ag    c     t               a                  
                                                                                

       250       260       270       280       290       300       310       320
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
  *  * *                                                                 *  *  *
acCcaGgAgtcctgcccagg-aggagccgacag------tgagccgt--cttcgaagatgtcttccctgccccCtgGggC
ga at a ------------g----tt-tcag-atttcc-c---aa-ggt-ca-gcctccagga-gaacgtgt at aa 
cg g      ttgt     a     --g----        -g  --   - --t---------- ----- aa  c  - 
                         c   gg         t          a                a           
                                                                                

       330       340       350       360       370       380       390       400
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
gtggagcagttccccctccgcccacacggcctca-------------------ct-cctg-cccaccgtccatggagtgt
ta-ct-atcc--gg-t-gatt-acgtat--tctgaccctgggcaagaaaaagt--c----cagatattc-ttcactaa-g
c- -- ----  -- a --a- --a---  -a-- a                   t    g-a---ac- -------- -
               -   -  g -      -                              -   --            
                                                                                

       410       420       430       440       450       460       470       480
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
t--------------------------------------ggaggcgcaggggcatgaacagctggtcccagagtacctgc
-tcagaacccggctcagccactccggatttctatgctct--t-atctt-cacatg----t-agtccg-atattctatgt-
                                         - -a-g- --a---    - -cc--a -g-c------- 
                                            - -    -          --  -  - -        
                                                                                

       490       500       510       520       530       540       550       560
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
gggaggcacttagcgccgagtt-cag--gg-c-gcca-ccaaggagaaggt-gct-t-----tg-a-gtgggg-c-cat-
tatcccgt-cc--t--------t---gg--t-g----t-------------t---t-gctgc--a-t------g-g---t
a-----ac -a tacaac  c c  aac cctccta g ggcac cccacacc  ggc    ga  gca  tacacatgc
-     -- g- c-  t     a       a a    c             a   c a        c      a a   a
                                                                                

       570       580       590       600       610       620       630       640
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
t-gag-atg---aaga-ga-gtca-ccaaga-------at-gcca-ccaccttgcccaaat-ggg-a-------------
-t---g---agg----g--g----t------cgcttct--t----g---------------t---g-ttcctggccccca
cgc  cgac   c  ca tcaa cc a gat      gc g   tcgggggcg   gtgcgc tac ca           
 a   a          t  a    a            c  c    a               a   a              
                c                                                               

       650       660       670       680       690       700       710       720
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
--------------------------------------------------------------------------------
gccgaagaggtccacggtctgggggaaagccgcaaggccaagggcagttctgtccatcagttcgtccagcgccagggcca
                 c                                                              
                                                                                
                                                                                

       730       740       750       760       770       780       790       800
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
-gg-tcccagcctc-a-----------------------------cccaaga-tggtcaa-a-cct-g-g-tgc------
t--t----------t-gcggccagtgctaagaaagatggagaaga-------t-------t-t---t-t-g---tgtttt
gtccgga c  a  cc  ac                         ggaggtcccatcggcccg g g caca  a aaaa
   a          g                                     a       a a   a a a         
              a                                                                 

       810       820       830       840       850       860       870       880
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
----tgtg-acctgtcggaagaagag-----------agggagcac---gct-cta-gc-----g-cca--gg-cc-gc-
tttc----g-----------------ttgtctccccg---------gtt---t---t--tcagt-t---gg--t--g--t
agaaa gtctt a ct  g aggc  cgc        gacacag  ccgc  gtatgcac   gtcg t   cc  c  c
        a                 aca                 aac   c   c  a   c a       a  a  a
                                                                                

       890       900       910       920       930       940       950       960
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
g-cttacccggag-----------------------------------------cc-t------------ggcc--gctc
-t-----------ttcaagatcatcacagaccaattcctaaggggtgtggacac--g-ggagaatgagag----gg----
tcgc c t tattg                                        aacg      gc   a t accc  g
 a           c                                          a                 aa    
                                                                                

       970       980       990      1000      1010      1020      1030      1040
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                                
atg-tggccatggtgctg--c-aa-aggtgg-----------------ccg--caca--c-c-cc-tg----c-------
---t--------------tt-t--t------cacgggcaagctcactg---tt----gt-g-t--t--gtta-ggtgctg
ggcgcttta g caa  cgggcgccgcac t                   agggtggcggcgc  c  cc  gc   a  
   c              ac a  a                          ac    aa a a  a  aa          
                                                                                

      1050      1060      1070      1080      1090      1100      1110      1120
....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....|
                                                                        *       
---tt-g-aa--ccgtggacctcatgcacaacttcgcgccctgg-tcca----cacgg-ggctgggagggtgTcctggcc
tgt--t-t--aa---a-t-gtatgatg--cggaa-tta-t----a----agcc---atg----------aca gagtaaa
gc ggccgcc  gaa- a ------aa  ----- c-- -    g    gcag   --t  aca   aa    a    t 
     a c         -       --        -                                          g 
                                                                                

      1130      1140      1150      1160      1170      1180     
....:....|....:....|....:....|....:....|....:....|....:....|....:
 *          **              * ******                             
gTttcacccgtgGA------------ccTgGACTGA-----------------------------
t ggtcagtaat  cttgaacttaccgg a      gatcttcctcagaagctgctacaagacta
a a    aa  a              aa                                     
                                                                 
                                                                 
© 1998-2024Centre National de la Recherche Scientifique logoInstitut national de la sante et de la recherche médicale logoUniversité de Lyon logoLegal notice